Splice
site information analysis publications
- Rogan PK,
Schneider TD. Using information content and base frequencies to
distinguish mutations from genetic polymorphisms in splice junction
recognition sites. Hum Mutation 6:74‑76, 1995.
View this article here.
- Kannabiran C, Rogan PK,
Basti S, Rao GN, Kaiser-Kupfer M, Hejtmancik JF: Autosomal dominant
zonular cataract with sutural opacities is associated with a splice
mutation in the betaA3/A1-crystallin gene. Mol Vision, 4: 21,
1998. View this article here.
- Rogan PK, Faux
B, Schneider TD: Information analysis of human splice site mutations Hum
Mutat. 12(3): 153-171, 1998. View this article here.
- Allikmets R, Wasserman WW, Hutchinson A, Smallwood P, Nathans J, Rogan PK, Schneider D, Dean
M: Organization of the ABCR gene: analysis of promoter and splice
junction sequences Gene, 215: 111-122, 1998. View
this article here.
- O’Neill JP, Rogan PK,
Cariello N, Nicklas JA: Mutations in the human HPRT gene which alter
RNA splicing: A review of the spectrum. Mutat Res. 411(3):179-214, 1998.
View this article here.
- Kodolitsch Yv, Pyeritz RE, Rogan PK: Splice site
mutations in atherosclerosis candidate genes: Relating individual
information to phenotype. Circulation 100: 693-699, 1999.
View this article here.
- Vockley J, Rogan PK,
Anderson BD, Willard J, Seelan RS, Smith DI, and Liu W:Exon skipping in
IVD RNA processing in Isovaleric Acidemia caused by point mutations in
the coding region of the IVD. Am J Hum Genet, 66:356-367, 2000.
View this article here.
- Svojanovsky S, Schneider T, Rogan PK: Redundant
designations of BRCA1 intron 11 splicing mutation. Hum. Mutation, 16:
264, 2000. View this article here.
- von Kodolitsch Y, Nienaber CA, Fliegner M, Rogan PK: Splice site
mutations in atherosclerosis: mechanisms and predictive models (note: this article is published in
German). Z. Kardiol 90: 87-95, 2001.
- Thompson TE, Rogan PK,
Risinger JI, Taylor JA: Splice Variants, But Not Mutations, of DNA
Polymerase beta Are Common in Bladder Cancers, Cancer Research,
62: 3251-3256, 2002. View this article here.
- Rogan PK,
Svojanovsky SR, Leeder JS: Information theory-based analysis of CYP219,
CYP2D6 and CYP3A5 splicing mutations, Pharmacogenetics, 13(4): 207-218,
2003. View this article here.
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Lamba V, Lamba J, Strom S, Davilac J, Hancocka M, Yang W, Fackenthald JD, Rogan PK, Ring B, Wrighton S, Schuetz EG. Hepatic CYP2B6 Expression: Gender and Population Differences and Relationship to CYP2B6 Genotype and CAR Expression. J Pharmacol Exp Ther. 2003 Dec; 307(3): 906-922. View this article here.
- Bi C-P, and Rogan PK:
Information theory as a model of genomic sequences, Encyclopedia of Bioinformatics, Genomics and Proteomics, Wiley NY, 2005. You can view this article here.
- Nalla, VK and Rogan PK:
Automated Splicing Mutation Analysis by Information Theory. Human Mutation, 25: 334-342, 2005. View this article here.
- Gaedigk, A Bhathena, L Ndjountche, R E Pearce, S M Abdel-Rahman, S W Alander, L DiAnne Bradford, P K Rogan , and J S Leeder, Identification and characterization of novel sequence variations in the cytochrome P4502D6 (CYP2D6) gene in African Americans. The Pharmacogenomics Journal 5:173-182; 5:276, 2005.
- Vesarat Wessagowit, Nalla VK, Rogan PK, John A. McGrath. Normal and abnormal mechanisms of gene splicing and relevance to inherited skin diseases. Journal of Dermatological Science, 40(2):73-84, 2005. View proof of this article here.
- Qingjiong Zhang, Fareeha Zulfiqar, S. Amer Riazuddin, Xueshan Xiao, Afshan Yasmeen, Peter K. Rogan, Raphael Caruso, Paul A. Sieving, Sheikh Riazuddin, J. Fielding Hejtmancik. A variant form of Oguchi disease mapped to 13q34 associated with partial deletion of GRK1 gene, Molecular Vision, 11:977-985, 2005. View proof of this article here.
- Yskert von Kodolitsch, Jurgen Berger, and Peter Rogan .
Predicting severity of haemophilia A and B splicing mutations by information analysis. Haemophilia, 12: 258-262, 2006. View this article here.
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Hobson G, Huang Z, Sperle K, Sistermans E, Rogan PK,Garbern JY, Kolodny E, Naidu S, and Cambi F. Splice site contribution in alternative splicing of PLP and DM20: molecular studies in oligodendrocytes. Hum. Mutation, DOI: 10.1002/humu.20276, 2005. View proof of this article here.